Table 4 |
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|
Selection response after several generations of genomic selection |
||||||||||||
|
h2 = 0.20 d2 = 0.05 |
h2 = 0.20 d2 = 0.10 |
|||||||||||
|
|
||||||||||||
|
GSD |
GSD + MA |
GSD |
GSD + MA |
|||||||||
|
|
||||||||||||
|
Gen. |
Markers |
QTL |
True |
Markers |
QTL |
True |
Markers |
QTL |
True |
Markers |
QTL |
True |
|
|
||||||||||||
|
1 |
0.471 (0.054) |
0.489 (0.119) |
0.639 (0.030) |
0.527 (0.048) |
0.631 (0.146) |
0.796 (0.035) |
0.470 (0.045) |
0.499 (0.079) |
0.637 (0.031) |
0.575 (0.060) |
0.724 (0.118) |
0.876 (0.040 |
|
2 |
0.280 (0.060) |
0.363 (0.093) |
0.492 (0.055) |
0.265 (0.060) |
0.348 (0.092) |
0.493 (0.052) |
0.275 (0.068) |
0.343 (0.096) |
0.489 (0.051) |
0.253 (0.082) |
0.317 (0.860) |
0.467 (0.054 |
|
3 |
0.206 (0.061) |
0.307 (0.085) |
0.479 (0.058) |
0.242 (0.054) |
0.316 (0.096) |
0.493 (0.058) |
0.224 (0.082) |
0.272 (0.105) |
0.452 (0.061) |
0.238 (0.060) |
0.305 (0.097) |
0.468 (0.059 |
|
4 |
0.180 (0.062) |
0.236 (0.129) |
0.445 (0.073) |
0.180 (0.051) |
0.230 (0.108) |
0.439 (0.068) |
0.181 (0.070) |
0.199 (0.146) |
0.412 (0.074) |
0.166 (0.066) |
0.204 (0.115) |
0.405 (0.070 |
|
5 |
0.177 (0.046) |
0.189 (0.137) |
0.425 (0.085) |
0.153 (0.059) |
0.200 (0.097) |
0.415 (0.079) |
0.152 (0.057) |
0.127 (0.135) |
0.374 (0.088) |
0.158 (0.059) |
0.180 (0.087) |
0.368 (0.081 |
|
|
||||||||||||
|
h2 = 0.40 d2 = 0.05 |
h2 = 0.40 d2 = 0.10 |
|||||||||||
|
|
||||||||||||
|
GSD |
GSD + MA |
GSD |
GSD + MA |
|||||||||
|
|
||||||||||||
|
Gen. |
Markers |
QTL |
True |
Markers |
QTL |
True |
Markers |
QTL |
True |
Markers |
QTL |
True |
|
|
||||||||||||
|
1 |
0.771 (0.062) |
0.840 (0.063) |
0.897 (0.048) |
0.815 (0.058) |
1.005 (0.056) |
1.048 (0.046) |
0.754 (0.052) |
0.840 (0.065) |
0.901 (0053) |
0.875 (0.066) |
1.076 (0.065) |
1.117 (0.060) |
|
2 |
0.520 (0.063) |
0.643 (0.089) |
0.732 (0.069) |
0.517 (0.070) |
0.644 (0.091) |
0.722 (0.084) |
0.513 (0.082) |
0.616 (0.105) |
0.686 (0.078) |
0.499 (0.089) |
0.603 (0.079) |
0.681 (0.091) |
|
3 |
0.434 (0.078) |
0.580 (0.123) |
0.676 (0.084) |
0.422 (0.070) |
0.587 (0.125) |
0.709 (0.093) |
0.420 (0.071) |
0.546 (0.107) |
0.650 (0.100) |
0.430 (0.079) |
0.600 (0.114) |
0.683 (0.096) |
|
4 |
0.361 (0.089) |
0.512 (0.119) |
0.643 (0.120) |
0.342 (0.092) |
0.499 (0.136) |
0.651 (0.127) |
0.324 (0.087) |
0.486 (0.144) |
0.609 (0.109) |
0.334 (0.087) |
0.470 (0.134) |
0.589 (0.110) |
|
5 |
0.301 (0.103) |
0.430 (0.136) |
0.607 (0.143) |
0.293 (0.089) |
0.426 (0.126) |
0.611 (0.142) |
0.291 (0.103) |
0.473 (0.143) |
0.551 (0.129) |
0.282 (0.089) |
0.451 (0.128) |
0.549 (0.129) |
|
|
||||||||||||
|
GSD (genomic selection with dominance) and GSD + MA (genomic selection with dominance and mate allocation) and using SNP markers (markers), QTL genotypes as markers (QTL), and known QTL effects (True) |
||||||||||||
|
Toro and Varona Genetics Selection Evolution 2010 42:33 doi:10.1186/1297-9686-42-33 |
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